phenotype vs make-up

phenotype and make-up both are nouns.

Word	Noun	Adjective	Verb	Adverb
phenotype	Yes	No	No	No
make-up	Yes	No	No	No

As nouns, make-up is a hypernym of phenotype; that is, make-up is a word with a broader meaning than phenotype:

phenotype: what an organism looks like as a consequence of the interaction of its genotype and the environment
make-up: the way in which someone or something is composed

Other hypernyms of phenotype include composition, constitution, makeup, physical composition.

phenotype (noun)	make-up (noun)
what an organism looks like as a consequence of the interaction of its genotype and the environment	cosmetics applied to the face to improve or change your appearance
	the way in which someone or something is composed
	an event that is substituted for a previously cancelled event